pyMSDtorch package

Subpackages

• pyMSDtorch.core package
  • Subpackages
    • pyMSDtorch.core.networks package
      • Submodules
      • pyMSDtorch.core.networks.AggNet module
      • pyMSDtorch.core.networks.MSDNet module
      • pyMSDtorch.core.networks.MSD_graph_tools module
      • pyMSDtorch.core.networks.SMSNet module
      • pyMSDtorch.core.networks.TUNet module
      • pyMSDtorch.core.networks.UNet module
      • pyMSDtorch.core.networks.graph_utils module
      • pyMSDtorch.core.networks.scale_up_down module
      • Module contents
  • Submodules
  • pyMSDtorch.core.corcoef module
    • cc()
  • pyMSDtorch.core.custom_losses module
    • DiceBCELoss
      • DiceBCELoss.forward()
      • DiceBCELoss.training
    • DiceLoss
      • DiceLoss.forward()
      • DiceLoss.training
    • FocalLoss
      • FocalLoss.forward()
      • FocalLoss.training
    • FocalTverskyLoss
      • FocalTverskyLoss.forward()
      • FocalTverskyLoss.training
    • L1LossMasked
      • L1LossMasked.forward()
      • L1LossMasked.training
    • MSELossMasked
      • MSELossMasked.forward()
      • MSELossMasked.training
    • TverskyLoss
      • TverskyLoss.forward()
      • TverskyLoss.training
    • tst()
  • pyMSDtorch.core.helpers module
    • RandomCrop_Dataset
    • binary_acc()
    • count_conv2d()
    • count_conv3d()
    • count_parameters()
    • create_class_mapping()
    • create_mask()
    • get_device()
    • get_in_channels()
    • get_out_channels()
    • make_dir()
    • save_decoded_image2d()
    • save_image_reconstructions2d()
    • save_loss_images()
    • save_training_images()
    • tst_directory()
  • pyMSDtorch.core.train_scripts module
    • autoencode_and_classify_training()
    • regression_metrics()
    • segmentation_metrics()
    • train_autoencoder()
    • train_labeling()
    • train_regression()
    • train_segmentation()
    • tst()
  • Module contents
• pyMSDtorch.test_data package
  • Subpackages
    • pyMSDtorch.test_data.twoD package
      • Submodules
      • pyMSDtorch.test_data.twoD.build_test_data module
      • pyMSDtorch.test_data.twoD.diffusion_model module
      • pyMSDtorch.test_data.twoD.noisy_gauss_2d module
      • pyMSDtorch.test_data.twoD.noisy_gauss_2d_time module
      • pyMSDtorch.test_data.twoD.random_shapes module
      • pyMSDtorch.test_data.twoD.torch_hdf5_loader module
      • pyMSDtorch.test_data.twoD.tst module
      • Module contents
  • Module contents
• pyMSDtorch.viz_tools package
  • Submodules
  • pyMSDtorch.viz_tools.plots module
    • plot_heatmap_and_labels()
    • plot_rgb_and_labels()
    • plot_shapes_data_numpy()
    • plot_training_results_regression()
    • plot_training_results_segmentation()
  • Module contents

Module contents

Top-level package for pyMSDtorch.